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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70625183_70631891_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
70625183 - 70631891
Intron Length:
6709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAC
U12 Branch Point Sequence:
GAACCATCAAAC
Flanking Amino Acid:
KRHDNQCILISGESGAGKTE
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
73
36.9
Major BPS
58.6
0.21
1
65
28.4
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
32.4
-2
3.3
43.9
43.9
Minor BPS
44.3
-0.4
1.8
50.77
38.1

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060