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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70648049_70684493_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70648049 - 70684493
Intron Length:
36445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTACTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTCTTTTTACT
Flanking Amino Acid:
VVVFRTDYGQVFTYKQSTIT
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.2
34.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
87.6
0.85
0.7
85.2
29.4
Minor 5ss
31.9
-2.1
3.3
41.7
44.9
Minor BPS
66.3
0.59
1.6
84.95
35.1

Associated Gene:

Gene:
MYO10
Ensembl Gene ID:
ENSAPLG00000007175
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007486
70554498 - 70687557
133060