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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70766380_70798364_R

Intron Information:

Intron Rank:
129104
Intron Class:
major
Intron Phase:
Intron Coordinates:
70766380 - 70798364
Intron Length:
31985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTCTGTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
84.3
0.77
0.8
79.7
32.4
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
55.6
0.17
2.4
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016640
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043681
70763660 - 70798531
34872