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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_70924038_70944205_F

Intron Information:

Intron Rank:
127811
Intron Class:
major
Intron Phase:
Intron Coordinates:
70924038 - 70944205
Intron Length:
20168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80.6
0.69
0.9
75.8
38.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
59.5
0.38
1.9
78.81
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018902
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048055
70923275 - 70944882
21608
ENSAPLT00000031935
70923275 - 70944882
21608