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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71007932_71008108_F

Intron Information:

Intron Rank:
140849
Intron Class:
major
Intron Phase:
Intron Coordinates:
71007932 - 71008108
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
ATTTGGTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
76.8
0.6
0.9
70.6
40
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
51.1
0.11
2.5
79.57
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025859
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022603
70968208 - 71008299
40092