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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71181064_71181967_R

Intron Information:

Intron Rank:
154974
Intron Class:
major
Intron Phase:
Intron Coordinates:
71181064 - 71181967
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TATTTGTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.6
40.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
75
0.56
1
70.3
39.8
Minor 5ss
37.2
-1.5
3
46.8
42.6
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040127
71180533 - 71182621
2089