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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71239090_71247918_F

Intron Information:

Intron Rank:
132204
Intron Class:
major
Intron Phase:
Intron Coordinates:
71239090 - 71247918
Intron Length:
8829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATCTAG
5'SS Class:
major
3'SS Sequence:
TTTATGTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCCTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59
42.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.7
0.73
0.9
80.6
36.8
Minor 5ss
43.7
-0.7
2.9
56.4
47.8
Minor BPS
75.2
0.79
1.6
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021033
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032038
71238977 - 71250641
11665