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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71248055_71249853_F

Intron Information:

Intron Rank:
132205
Intron Class:
major
Intron Phase:
Intron Coordinates:
71248055 - 71249853
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCATCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
TTTTCCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
74.6
0.55
0.8
67.2
34.3
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
56.5
0.28
2.1
85.43
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021033
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032038
71238977 - 71250641
11665