About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71319593_71327384_R

Intron Information:

Intron Rank:
147537
Intron Class:
major
Intron Phase:
Intron Coordinates:
71319593 - 71327384
Intron Length:
7792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCAATAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
79.1
30.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.4
0.66
0.8
70
35.9
Minor 5ss
49.2
-0
2.5
66.7
44.7
Minor BPS
53.5
0.19
2.2
79.79
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026738
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025908
71319477 - 71333008
13532