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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71327539_71332888_R

Intron Information:

Intron Rank:
147538
Intron Class:
major
Intron Phase:
Intron Coordinates:
71327539 - 71332888
Intron Length:
5350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGTAT
U12 Branch Point Sequence:
TTCCTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
62.7
0.32
1.4
63.4
44
Major PPT
83.4
0.75
0.8
76.8
31.2
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
49.5
-0.1
1.8
57.38
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026738
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025908
71319477 - 71333008
13532