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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71493767_71509114_F

Intron Information:

Intron Rank:
128180
Intron Class:
major
Intron Phase:
Intron Coordinates:
71493767 - 71509114
Intron Length:
15348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
GGTTTTGTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAA
U12 Branch Point Sequence:
TCTGTCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71.3
40.3
Major BPS
66.5
0.41
1.1
68.2
37.5
Major PPT
70.3
0.46
1
64.7
41.4
Minor 5ss
38
-1.4
2.8
52.3
44.3
Minor BPS
61.5
0.44
1.5
75.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019033
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041316
71493429 - 71591892
98464
ENSAPLT00000039560
71493429 - 71609593
116165
ENSAPLT00000030427
71493429 - 71597315
103887
ENSAPLT00000023559
71493429 - 71532914
39486