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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71591527_71596044_F

Intron Information:

Intron Rank:
128184
Intron Class:
major
Intron Phase:
Intron Coordinates:
71591527 - 71596044
Intron Length:
4518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CTTCTCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
85.3
0.79
0.7
80.1
25.2
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
67.7
0.55
1.4
73.75
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019033
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030427
71493429 - 71597315
103887