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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71674093_71675056_R

Intron Information:

Intron Rank:
129239
Intron Class:
major
Intron Phase:
Intron Coordinates:
71674093 - 71675056
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTTAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTCCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.1
0.56
1
70.5
39.9
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
83.1
1.12
1
93.31
27.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016735
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037998
71673878 - 71678272
4395