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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71681386_71685813_R

Intron Information:

Intron Rank:
133978
Intron Class:
major
Intron Phase:
Intron Coordinates:
71681386 - 71685813
Intron Length:
4428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATGACATTACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
100
1.12
0.4
100
0
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
46.3
-0.4
1.9
51.58
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019352
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027464
71681085 - 71686706
5622
ENSAPLT00000026505
71681085 - 71694900
13816