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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71686066_71686401_R

Intron Information:

Intron Rank:
133981
Intron Class:
major
Intron Phase:
Intron Coordinates:
71686066 - 71686401
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATTAC
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
49.7
-0
1.2
43.7
38.9
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019352
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027464
71681085 - 71686706
5622