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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71765456_71765953_F

Intron Information:

Intron Rank:
139971
Intron Class:
major
Intron Phase:
Intron Coordinates:
71765456 - 71765953
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTATA
5'SS Class:
major
3'SS Sequence:
TCATGCTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATGCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.3
79.7
35.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79
0.65
0.9
72.2
37.7
Minor 5ss
40.8
-1
2.6
51.4
45.1
Minor BPS
54.8
0.14
2.1
67.92
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025249
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036717
71765190 - 71769084
3895