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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71766039_71768505_F

Intron Information:

Intron Rank:
139972
Intron Class:
major
Intron Phase:
Intron Coordinates:
71766039 - 71768505
Intron Length:
2467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTTATCTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATCGCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
70
35.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.2
0.82
0.7
84.8
29.9
Minor 5ss
43.3
-0.7
2.5
56
42.5
Minor BPS
58.4
0.34
1.7
73.56
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025249
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036717
71765190 - 71769084
3895