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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71801177_71802778_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71801177 - 71802778
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTAAACCTAATC
Flanking Amino Acid:
AILLCVVILLAIVVLFITLR
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.6
0.76
0.7
82.1
30
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
50.7
0
1.9
66.29
38.7

Associated Gene:

Gene:
CDH18
Ensembl Gene ID:
ENSAPLG00000005731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040098
71800686 - 72021769
221084
ENSAPLT00000024491
71800686 - 72137027
336342
ENSAPLT00000023950
71800686 - 72137027
336342
ENSAPLT00000005918
71800686 - 72137027
336342