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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71803031_71821889_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71803031 - 71821889
Intron Length:
18859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATACCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTCTTTTGATA
Flanking Amino Acid:
NPNFTLRDNEDNTASILTRR
Intron Amino Acid Position:
544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
68.8
0.42
0.9
62.9
38.1
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
66.8
0.52
1.1
74.7
30

Associated Gene:

Gene:
CDH18
Ensembl Gene ID:
ENSAPLG00000005731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023950
71800686 - 72137027
336342
ENSAPLT00000005918
71800686 - 72137027
336342
ENSAPLT00000040098
71800686 - 72021769
221084
ENSAPLT00000024491
71800686 - 72137027
336342