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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71846473_71866014_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
71846473 - 71866014
Intron Length:
19542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TATTTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTATTTTATTT
Flanking Amino Acid:
QDPDAANSLVRYFIDHNTEE
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.2
0.72
0.7
81.6
30
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
51
0.11
1.6
65.86
39.8

Associated Gene:

Gene:
CDH18
Ensembl Gene ID:
ENSAPLG00000005731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040098
71800686 - 72021769
221084
ENSAPLT00000024491
71800686 - 72137027
336342
ENSAPLT00000023950
71800686 - 72137027
336342
ENSAPLT00000005918
71800686 - 72137027
336342