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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71866269_71873773_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71866269 - 71873773
Intron Length:
7505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TTTCTGCCAACA
Flanking Amino Acid:
TREGILSLKKPLNYEKKKSY
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
76.8
0.67
1
66
40.9
Major PPT
75.1
0.57
0.9
70.3
35.1
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
44.1
-0.4
2.4
65.62
40.5

Associated Gene:

Gene:
CDH18
Ensembl Gene ID:
ENSAPLG00000005731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005918
71800686 - 72137027
336342
ENSAPLT00000040098
71800686 - 72021769
221084
ENSAPLT00000024491
71800686 - 72137027
336342
ENSAPLT00000023950
71800686 - 72137027
336342