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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71873962_71951886_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71873962 - 71951886
Intron Length:
77925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
QPYFSVDPKTEHYQLYVPES
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
86.9
30.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
76.4
0.59
0.7
73.3
24.9
Minor 5ss
34.8
-1.7
3.2
50.1
46.4
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
CDH18
Ensembl Gene ID:
ENSAPLG00000005731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023950
71800686 - 72137027
336342