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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_71961527_72002321_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
71961527 - 72002321
Intron Length:
40795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
ATATATTCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATATAATT
Flanking Amino Acid:
MGPDPQYVGKLHSNSDKGDG
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.8
0.6
0.9
69.8
40.5
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
64
0.52
1.7
85.84
34

Associated Gene:

Gene:
CDH18
Ensembl Gene ID:
ENSAPLG00000005731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024491
71800686 - 72137027
336342
ENSAPLT00000023950
71800686 - 72137027
336342
ENSAPLT00000005918
71800686 - 72137027
336342
ENSAPLT00000040098
71800686 - 72021769
221084