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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72017437_72021692_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
72017437 - 72021692
Intron Length:
4256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TGATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAATTCTGAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
69.1
37.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82.7
0.74
0.9
76.7
37.3
Minor 5ss
35.2
-1.7
3.2
41.6
38.8
Minor BPS
71.5
0.75
1.4
83.11
37.2

Associated Gene:

Gene:
CDH18
Ensembl Gene ID:
ENSAPLG00000005731
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040098
71800686 - 72021769
221084