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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72311858_72314126_R

Intron Information:

Intron Rank:
149089
Intron Class:
major
Intron Phase:
Intron Coordinates:
72311858 - 72314126
Intron Length:
2269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGCAT
5'SS Class:
major
3'SS Sequence:
TCTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
TCTGTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
67.5
39
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
88.5
0.87
0.7
83.2
31.9
Minor 5ss
27
-2.6
3.3
38.2
46.7
Minor BPS
54.2
0.12
1.7
65.78
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027706
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026999
72311545 - 72315994
4450