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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72314235_72315951_R

Intron Information:

Intron Rank:
149090
Intron Class:
major
Intron Phase:
Intron Coordinates:
72314235 - 72315951
Intron Length:
1717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTAAA
5'SS Class:
major
3'SS Sequence:
ATGTGACTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATGTATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.3
75.9
35.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.3
0.5
1
67.2
43.4
Minor 5ss
36.5
-1.5
2.5
42.3
44.5
Minor BPS
55.9
0.26
1.8
75.41
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027706
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026999
72311545 - 72315994
4450