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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72334271_72339686_R

Intron Information:

Intron Rank:
132839
Intron Class:
major
Intron Phase:
Intron Coordinates:
72334271 - 72339686
Intron Length:
5416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCTGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAACCAT
U12 Branch Point Sequence:
TTTTCCTTTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
49.6
-0
1.3
58.8
37.4
Major PPT
68.1
0.41
0.9
60.4
35.3
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018684
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020725
72316015 - 72340356
24342