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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72379922_72396887_R

Intron Information:

Intron Rank:
133115
Intron Class:
major
Intron Phase:
Intron Coordinates:
72379922 - 72396887
Intron Length:
16966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTGTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AATAAATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
81.7
0.71
0.9
77.3
36.6
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
47.7
-0.1
1.9
60.27
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018851
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044595
72379288 - 72397366
18079