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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72527343_72528024_F

Intron Information:

Intron Rank:
139262
Intron Class:
major
Intron Phase:
Intron Coordinates:
72527343 - 72528024
Intron Length:
682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
ATATATTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCAAATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
76.8
0.6
0.9
74.4
40.2
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
49.9
0.07
1.9
72.71
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024976
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038424
72526121 - 72529371
3251