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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72828862_72831930_F

Intron Information:

Intron Rank:
129824
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
72828862 - 72831930
Intron Length:
3069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTTTA
5'SS Class:
major
3'SS Sequence:
ATACATCATGGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
76.9
34.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
47.8
-0.1
1.7
51.8
41.9
Minor 5ss
42.5
-0.8
3.1
58.1
46.4
Minor BPS
67
0.62
1.6
83.81
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019876
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017649
72828614 - 72849424
20811