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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72890781_72890897_R

Intron Information:

Intron Rank:
148218
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
72890781 - 72890897
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGCGCTCT
5'SS Class:
weak_major
3'SS Sequence:
CTCTCCCCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAA
U12 Branch Point Sequence:
AGATGGTAAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.1
53.2
40.7
Major BPS
60.1
0.25
1.3
61.7
43.1
Major PPT
70.2
0.45
0.7
62.2
28.8
Minor 5ss
41.2
-1
3.2
52.7
45.3
Minor BPS
40.3
-0.8
2.5
47.08
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027073
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044966
72889398 - 72891030
1633