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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72946774_72947683_F

Intron Information:

Intron Rank:
149860
Intron Class:
major
Intron Phase:
Intron Coordinates:
72946774 - 72947683
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATGATT
5'SS Class:
major
3'SS Sequence:
TCATTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTGTTCTTACAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
80.5
33.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82.6
0.73
0.9
76.6
36.3
Minor 5ss
32.8
-2
3.3
48.4
47.4
Minor BPS
60.7
0.33
1.7
71.86
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032193
72946225 - 72947804
1580