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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72947817_72951438_F

Intron Information:

Intron Rank:
149861
Intron Class:
major
Intron Phase:
Intron Coordinates:
72947817 - 72951438
Intron Length:
3622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.6
0.87
0.8
86.6
31.3
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045344
72947626 - 72951950
4325