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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72947817_72951800_F

Intron Information:

Intron Rank:
149859
Intron Class:
major
Intron Phase:
Intron Coordinates:
72947817 - 72951800
Intron Length:
3984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CAATCCCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
67.7
0.4
1.1
71.9
37.4
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
59.8
0.3
1.7
66.33
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030617
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024568
72947626 - 72952735
5110