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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72964874_72970850_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72964874 - 72970850
Intron Length:
5977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATGTCTTAACT
Flanking Amino Acid:
AILLCIVILLVIVVLYVALR
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
30.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.8
0.83
0.7
81.1
29.4
Minor 5ss
39.2
-1.2
2.7
51.6
44.8
Minor BPS
71.6
0.76
1.4
80.35
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014996
72964374 - 73351992
387619