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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72971103_72976146_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72971103 - 72976146
Intron Length:
5044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AATCCTGTAATA
Flanking Amino Acid:
KPNFTVHDYRNNTAGIETRK
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.8
0.72
0.9
75.7
38
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
51.1
0.03
2
64.21
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014996
72964374 - 73351992
387619