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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72976265_72977878_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72976265 - 72977878
Intron Length:
1614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
AATTTGGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTAACCTTAATT
Flanking Amino Acid:
SVCENAKPGQVIQTVTAADK
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
74.3
0.55
1
70
45
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
81.4
1.06
1.1
89.98
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014996
72964374 - 73351992
387619