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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_72985272_73001185_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72985272 - 73001185
Intron Length:
15914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTGTTTAACA
Flanking Amino Acid:
QDLDAGSSSVRYFIDWKNDV
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
82.8
0.74
0.9
77.7
34.7
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
69.3
0.6
1.8
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014996
72964374 - 73351992
387619