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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73011885_73031649_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
73011885 - 73031649
Intron Length:
19765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATGTTGT
5'SS Class:
weak_major
3'SS Sequence:
CTCTTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTACATTTATCT
Flanking Amino Acid:
VNDNPPRFPKSIFHLKVPES
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
65.1
41.6
Major BPS
79
0.72
1
80.3
31.7
Major PPT
83.9
0.76
0.7
79.2
26.5
Minor 5ss
49.3
-0
2.5
62.8
42.9
Minor BPS
55
0.24
1.8
75.49
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014996
72964374 - 73351992
387619