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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73031818_73036805_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73031818 - 73036805
Intron Length:
4988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCGTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
ATTTGTTTACTT
Flanking Amino Acid:
QPYFSIDPKTGVIRTALPNM
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
70.9
0.47
0.8
68.7
31.7
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
55.6
0.25
2
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014996
72964374 - 73351992
387619