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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73127878_73196757_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
73127878 - 73196757
Intron Length:
68880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCTCTTTTATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.8
78.8
35.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.4
0.71
0.8
76.5
31.5
Minor 5ss
33
-1.9
3.1
41.3
45.2
Minor BPS
61.3
0.35
1.6
68.76
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014996
72964374 - 73351992
387619