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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73357307_73359016_F

Intron Information:

Intron Rank:
127311
Intron Class:
major
Intron Phase:
Intron Coordinates:
73357307 - 73359016
Intron Length:
1710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
GTACCTTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATTCTGTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.7
39.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
72.4
0.51
0.9
69.5
36.5
Minor 5ss
26.9
-2.6
2.7
23.2
36.9
Minor BPS
50.6
0.1
2.2
75.1
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018645
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042389
73357223 - 73360036
2814