About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73561491_73562862_F

Intron Information:

Intron Rank:
139607
Intron Class:
major
Intron Phase:
Intron Coordinates:
73561491 - 73562862
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
80.3
32.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.8
0.78
0.8
80.2
32
Minor 5ss
45.7
-0.4
2.6
62.6
42.2
Minor BPS
68.1
0.65
1.6
84.1
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025041
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037261
73560712 - 73563583
2872