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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73865616_73866098_R

Intron Information:

Intron Rank:
154011
Intron Class:
major
Intron Phase:
Intron Coordinates:
73865616 - 73866098
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAAAC
5'SS Class:
major
3'SS Sequence:
AATCCCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CAAACTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
68.4
36.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.9
0.54
0.8
70.5
35.1
Minor 5ss
31.7
-2.1
3.3
42.3
44.8
Minor BPS
60.9
0.32
1.3
60.94
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030340
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019766
73864014 - 73866727
2714