About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73865616_73867809_R

Intron Information:

Intron Rank:
154013
Intron Class:
major
Intron Phase:
Intron Coordinates:
73865616 - 73867809
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGGTAT
5'SS Class:
major
3'SS Sequence:
AATCCCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CAAACTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
68.5
38.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.9
0.54
0.8
70.5
35.1
Minor 5ss
37.5
-1.4
3.6
51.8
47.2
Minor BPS
60.9
0.32
1.3
60.94
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030340
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033168
73864541 - 73868440
3900