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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73865616_73870793_R

Intron Information:

Intron Rank:
154012
Intron Class:
major
Intron Phase:
Intron Coordinates:
73865616 - 73870793
Intron Length:
5178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AATCCCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CAAACTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.9
0.54
0.8
70.5
35.1
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
60.9
0.32
1.3
60.94
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030340
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024920
73864959 - 73870826
5868