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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73887374_73888066_F

Intron Information:

Intron Rank:
128886
Intron Class:
major
Intron Phase:
Intron Coordinates:
73887374 - 73888066
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
84.8
0.78
0.8
76.6
37.4
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
49.9
0.08
1.9
72.7
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019341
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043961
73887262 - 73888483
1222