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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_73888134_73889937_F

Intron Information:

Intron Rank:
128885
Intron Class:
major
Intron Phase:
Intron Coordinates:
73888134 - 73889937
Intron Length:
1804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTCAC
5'SS Class:
major
3'SS Sequence:
TCTTCTTTTGGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
AAAATTTAGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
65.3
40.7
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
69.8
0.45
1.7
80.1
31.8
Minor 5ss
33.5
-1.9
3.1
44.4
43.4
Minor BPS
45.3
-0.3
1.6
49.89
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019341
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031274
73887550 - 73890143
2594