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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74056109_74058839_F

Intron Information:

Intron Rank:
123969
Intron Class:
major
Intron Phase:
Intron Coordinates:
74056109 - 74058839
Intron Length:
2731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATCT
5'SS Class:
major
3'SS Sequence:
TCTTGTTCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAGAT
U12 Branch Point Sequence:
TAGATCAAGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69.7
35.1
Major BPS
62.6
0.31
1
58.7
38.1
Major PPT
75.3
0.57
1
79.3
33.1
Minor 5ss
46.7
-0.3
2.8
66.5
44.4
Minor BPS
42.3
-0.5
1.8
56.6
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021812
74051651 - 74063908
12258