About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_74058943_74063690_F

Intron Information:

Intron Rank:
123970
Intron Class:
major
Intron Phase:
Intron Coordinates:
74058943 - 74063690
Intron Length:
4748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TACTCTGCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
82
0.72
1
76.9
42.1
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
48.1
-0
2.2
68.76
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016812
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021812
74051651 - 74063908
12258